Cascade-AT for Dismod
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Cascade-AT for Dismod
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__call__() (cascade_at.model.var.Var method)
__dir__() (cascade_at.core.db.ModuleProxy method)
__getitem__() (cascade_at.model.var.Var method)
__init__() (cascade_at.core.db.ModuleProxy method)
__setitem__() (cascade_at.model.var.Var method)
_CascadeCommand (class in cascade_at.cascade.cascade_commands)
_CascadeOperation (class in cascade_at.cascade.cascade_operations)
_configure() (cascade_at.cascade.cascade_operations._CascadeOperation method)
_DismodDB (class in cascade_at.cascade.cascade_operations)
_DismodThread (class in cascade_at.dismod.api.multithreading)
_make_command() (cascade_at.cascade.cascade_operations._CascadeOperation method)
_make_name() (cascade_at.cascade.cascade_operations._CascadeOperation method)
_make_template() (cascade_at.cascade.cascade_operations._CascadeOperation method)
_make_template_kwargs() (cascade_at.cascade.cascade_operations._CascadeOperation method)
_script() (cascade_at.cascade.cascade_operations._CascadeOperation static method)
_validate() (cascade_at.cascade.cascade_operations._CascadeOperation method)
A
accept_after_max_steps (cascade_at.settings.settings_config.SettingsConfig attribute)
add_covariates_to_data() (cascade_at.inputs.measurement_inputs.MeasurementInputs method)
add_csmr_cause (cascade_at.settings.settings_config.Model attribute)
add_task() (cascade_at.cascade.cascade_commands._CascadeCommand method)
addl_ode_stpes (cascade_at.settings.settings_config.Model attribute)
age_grid (cascade_at.settings.settings_config.CountryCovariate attribute)
(cascade_at.settings.settings_config.Smoothing attribute)
(cascade_at.settings.settings_config.StudyCovariate attribute)
age_group_set_id (cascade_at.settings.settings_config.Policies attribute)
age_lower (cascade_at.settings.settings_config.SmoothingPrior attribute)
age_time() (cascade_at.model.age_time_grid.AgeTimeGrid method)
age_time_specific (cascade_at.settings.settings_config.CountryCovariate attribute)
(cascade_at.settings.settings_config.Smoothing attribute)
(cascade_at.settings.settings_config.StudyCovariate attribute)
age_upper (cascade_at.settings.settings_config.SmoothingPrior attribute)
AgeTimeGrid (class in cascade_at.model.age_time_grid)
Alchemy (class in cascade_at.model.grid_alchemy)
application_config() (in module cascade_at.context.configuration)
apply_min_cv_to_prior_grid() (cascade_at.model.grid_alchemy.Alchemy static method)
ArgumentList (class in cascade_at.executor.args.arg_utils)
asdr (cascade_at.inputs.measurement_inputs.MeasurementInputs.self attribute)
ASDR (class in cascade_at.inputs.asdr)
attach_to_model_version_in_db() (cascade_at.inputs.csmr.CSMR method)
B
birth_prev (cascade_at.settings.settings_config.Model attribute)
BoolArg (class in cascade_at.executor.args.args)
BoolField (class in cascade_at.core.form.fields)
born_lower (cascade_at.settings.settings_config.SmoothingPrior attribute)
born_upper (cascade_at.settings.settings_config.SmoothingPrior attribute)
bound_frac_fixed (cascade_at.settings.settings_config.Model attribute)
bound_random (cascade_at.settings.settings_config.Model attribute)
branch_fit() (in module cascade_at.cascade.cascade_stacks)
branch_or_leaf() (in module cascade_at.cascade.cascade_dags)
built-in function
cascade_at.model.priors._Prior.assign()
cascade_at.model.priors._Prior.parameters()
bundle_id (cascade_at.settings.settings_config.Model attribute)
C
calculate_country_covariate_reference_values() (cascade_at.inputs.measurement_inputs.MeasurementInputs method)
calculate_omega() (in module cascade_at.inputs.utilities.data)
calculate_reference_covariates() (cascade_at.dismod.api.dismod_filler.DismodFiller method)
cascade.model.DismodGroups (built-in class)
cascade_at.cascade.cascade_commands
module
cascade_at.cascade.cascade_dags
module
cascade_at.cascade.cascade_stacks
module
cascade_at.core.form.abstract_form
module
cascade_at.core.form.fields
module
cascade_at.dismod.api.run_dismod
module
cascade_at.executor.args.args
module
cascade_at.executor.upload
module
cascade_at.inputs.covariate_specs
module
cascade_at.inputs.utilities.covariate_specifications
module
cascade_at.model.priors._Prior (built-in class)
cascade_at.model.priors._Prior.assign()
built-in function
cascade_at.model.priors._Prior.parameters()
built-in function
cascade_at.saver.results_handler
module
cascade_at.settings.convert
module
cascade_at.settings.settings
module
cascade_at.settings.settings_config
module
cascade_level_id (cascade_at.settings.settings_config.MinCV attribute)
(cascade_at.settings.settings_config.MinCVRate attribute)
CascadeArgError
chi (cascade_at.dismod.constants.RateEnum attribute)
children() (cascade_at.inputs.locations.LocationDAG method)
CleanUp (class in cascade_at.cascade.cascade_operations)
cleanup() (in module cascade_at.executor.cleanup)
compute_statistics() (in module cascade_at.executor.mulcov_statistics)
config_version (cascade_at.settings.settings_config.SettingsConfig attribute)
configure_for_dismod() (cascade_at.inputs.asdr.ASDR method)
(cascade_at.inputs.covariate_data.CovariateData method)
(cascade_at.inputs.csmr.CSMR method)
(cascade_at.inputs.data.CrosswalkVersion method)
(cascade_at.inputs.population.Population method)
configure_inputs() (in module cascade_at.executor.configure_inputs)
configure_inputs_for_dismod() (cascade_at.inputs.measurement_inputs.MeasurementInputs method)
ConfigureInputs (class in cascade_at.cascade.cascade_operations)
constant (cascade_at.dismod.constants.WeightEnum attribute)
Constant (class in cascade_at.model.priors)
constrain_omega (cascade_at.settings.settings_config.Model attribute)
construct_age_time_grid() (cascade_at.model.grid_alchemy.Alchemy method)
construct_covariate_table() (in module cascade_at.dismod.api.fill_extract_helpers.reference_tables)
construct_data_table() (in module cascade_at.dismod.api.fill_extract_helpers.data_tables)
construct_density_table() (in module cascade_at.dismod.api.fill_extract_helpers.reference_tables)
construct_gbd_avgint_table() (in module cascade_at.dismod.api.fill_extract_helpers.data_tables)
construct_integrand_table() (in module cascade_at.dismod.api.fill_extract_helpers.reference_tables)
construct_model_tables() (in module cascade_at.dismod.api.fill_extract_helpers.grid_tables)
construct_node_table() (in module cascade_at.dismod.api.fill_extract_helpers.reference_tables)
construct_option_table() (cascade_at.dismod.api.dismod_filler.DismodFiller method)
construct_single_age_time_grid() (cascade_at.model.grid_alchemy.Alchemy method)
construct_subgroup_table() (in module cascade_at.dismod.api.fill_extract_helpers.grid_tables)
construct_two_level_model() (cascade_at.model.grid_alchemy.Alchemy method)
construct_weight_grid_tables() (in module cascade_at.dismod.api.fill_extract_helpers.grid_tables)
Context (class in cascade_at.context.model_context)
country_covariate (cascade_at.settings.settings_config.SettingsConfig attribute)
country_covariate_id (cascade_at.settings.settings_config.CountryCovariate attribute)
CountryCovariate (class in cascade_at.settings.settings_config)
Covariate (class in cascade_at.model.covariate)
covariate_data (cascade_at.inputs.measurement_inputs.MeasurementInputs.self attribute)
CovariateData (class in cascade_at.inputs.covariate_data)
CovariateInterpolator (class in cascade_at.inputs.utilities.covariate_weighting)
CovariateSpecs (class in cascade_at.inputs.covariate_specs)
create_covariate_list() (cascade_at.inputs.covariate_specs.CovariateSpecs method)
create_covariate_specifications() (in module cascade_at.inputs.utilities.covariate_specifications)
create_tables() (cascade_at.dismod.api.dismod_sqlite.DismodSQLite method)
crosswalk_version_id (cascade_at.settings.settings_config.Model attribute)
CrosswalkVersion (class in cascade_at.inputs.data)
csmr (cascade_at.inputs.measurement_inputs.MeasurementInputs.self attribute)
CSMR (class in cascade_at.inputs.csmr)
csmr_cod_output_version_id (cascade_at.settings.settings_config.SettingsConfig attribute)
csmr_mortality_output_version_id (cascade_at.settings.settings_config.SettingsConfig attribute)
custom_age_grid (cascade_at.settings.settings_config.CountryCovariate attribute)
(cascade_at.settings.settings_config.Smoothing attribute)
(cascade_at.settings.settings_config.StudyCovariate attribute)
custom_time_grid (cascade_at.settings.settings_config.CountryCovariate attribute)
(cascade_at.settings.settings_config.Smoothing attribute)
(cascade_at.settings.settings_config.StudyCovariate attribute)
D
dage (cascade_at.settings.settings_config.SmoothingPriorGroup attribute)
data (cascade_at.inputs.measurement_inputs.MeasurementInputs.self attribute)
(cascade_at.settings.settings_config.Eta attribute)
(cascade_at.settings.settings_config.StudentsDOF attribute)
data_cv_by_integrand (cascade_at.settings.settings_config.SettingsConfig attribute)
data_cv_from_settings() (in module cascade_at.settings.convert)
data_density (cascade_at.settings.settings_config.Model attribute)
data_density_by_integrand (cascade_at.settings.settings_config.SettingsConfig attribute)
data_eta (cascade_at.inputs.measurement_inputs.MeasurementInputs.self attribute)
data_eta_by_integrand (cascade_at.settings.settings_config.SettingsConfig attribute)
data_eta_from_settings() (in module cascade_at.settings.convert)
DataCV (class in cascade_at.settings.settings_config)
DataDensity (class in cascade_at.settings.settings_config)
DataEta (class in cascade_at.settings.settings_config)
db_file() (cascade_at.context.model_context.Context method)
db_folder() (cascade_at.context.model_context.Context method)
db_index_file_pattern() (cascade_at.context.model_context.Context method)
decomp_step (cascade_at.inputs.measurement_inputs.MeasurementInputs.self attribute)
decomp_step_id (cascade_at.settings.settings_config.Model attribute)
default (cascade_at.settings.settings_config.CountryCovariate attribute)
(cascade_at.settings.settings_config.Smoothing attribute)
(cascade_at.settings.settings_config.StudyCovariate attribute)
default_age_grid (cascade_at.settings.settings_config.Model attribute)
default_rate_table() (in module cascade_at.dismod.api.fill_extract_helpers.reference_tables)
default_time_grid (cascade_at.settings.settings_config.Model attribute)
demographics (cascade_at.inputs.measurement_inputs.MeasurementInputs.self attribute)
Demographics (class in cascade_at.inputs.demographics)
density (cascade_at.inputs.measurement_inputs.MeasurementInputs.self attribute)
(cascade_at.settings.settings_config.SmoothingPrior attribute)
density_from_settings() (in module cascade_at.settings.convert)
DensityEnum (class in cascade_at.dismod.constants)
depth() (cascade_at.inputs.locations.LocationDAG method)
derivative_test (cascade_at.settings.settings_config.SettingsConfig attribute)
DerivativeTest (class in cascade_at.settings.settings_config)
descendants() (cascade_at.inputs.locations.LocationDAG method)
description (cascade_at.settings.settings_config.Model attribute)
detail (cascade_at.settings.settings_config.CountryCovariate attribute)
(cascade_at.settings.settings_config.Smoothing attribute)
(cascade_at.settings.settings_config.StudyCovariate attribute)
dismod_data (cascade_at.inputs.measurement_inputs.MeasurementInputs.self attribute)
dismod_db() (in module cascade_at.executor.dismod_db)
DismodExtractor (class in cascade_at.dismod.api.dismod_extractor)
DismodFiller (class in cascade_at.dismod.api.dismod_filler)
DismodSQLite (class in cascade_at.dismod.api.dismod_sqlite)
DmCommands (class in cascade_at.executor.args.args)
dmdismod_in_parallel() (in module cascade_at.dismod.api.multithreading)
DmOptions (class in cascade_at.executor.args.args)
draw_keys (cascade_at.saver.results_handler.ResultsHandler.self attribute)
drill (cascade_at.settings.settings_config.Model attribute)
Drill (class in cascade_at.cascade.cascade_commands)
drill_location (cascade_at.settings.settings_config.Model attribute)
drill_location_end (cascade_at.settings.settings_config.Model attribute)
drill_location_start (cascade_at.settings.settings_config.Model attribute)
drill_sex (cascade_at.settings.settings_config.Model attribute)
dtime (cascade_at.settings.settings_config.SmoothingPriorGroup attribute)
Dummy (class in cascade_at.core.form.fields)
E
empty_table() (cascade_at.dismod.api.dismod_sqlite.DismodSQLite method)
encode_commands() (in module cascade_at.executor.args.arg_utils)
encode_options() (in module cascade_at.executor.args.arg_utils)
EpiVizCovariate (class in cascade_at.inputs.utilities.covariate_specifications)
EpiVizCovariateMultiplier (class in cascade_at.inputs.utilities.covariate_specifications)
estimate_emr_from_prevalence (cascade_at.settings.settings_config.Policies attribute)
eta (cascade_at.settings.settings_config.SettingsConfig attribute)
(cascade_at.settings.settings_config.SmoothingPrior attribute)
Eta (class in cascade_at.settings.settings_config)
exclude_data_for_param (cascade_at.settings.settings_config.Model attribute)
exclude_relative_risk (cascade_at.settings.settings_config.Policies attribute)
F
Field (class in cascade_at.core.form.abstract_form)
fill_avgint_with_priors_grid() (in module cascade_at.executor.predict)
fill_data_tables() (cascade_at.dismod.api.dismod_filler.DismodFiller method)
fill_database() (in module cascade_at.executor.dismod_db)
fill_for_parent_child() (cascade_at.dismod.api.dismod_filler.DismodFiller method)
fill_grid_tables() (cascade_at.dismod.api.dismod_filler.DismodFiller method)
fill_reference_tables() (cascade_at.dismod.api.dismod_filler.DismodFiller method)
Fit (class in cascade_at.cascade.cascade_operations)
FitSample (class in cascade_at.executor.sample)
fixed (cascade_at.settings.settings_config.DerivativeTest attribute)
(cascade_at.settings.settings_config.FixedRandomFloat attribute)
(cascade_at.settings.settings_config.FixedRandomInt attribute)
FixedRandomFloat (class in cascade_at.settings.settings_config)
FixedRandomInt (class in cascade_at.settings.settings_config)
FloatArg (class in cascade_at.executor.args.args)
FloatField (class in cascade_at.core.form.fields)
Form (class in cascade_at.core.form.abstract_form)
format_predictions_for_ihme() (cascade_at.dismod.api.dismod_extractor.DismodExtractor method)
format_rate_grid_for_ihme() (in module cascade_at.dismod.api.fill_extract_helpers.posterior_to_prior)
format_upload() (in module cascade_at.executor.upload)
FormComponent (class in cascade_at.core.form.abstract_form)
FormList (class in cascade_at.core.form.fields)
G
gather_draws_for_prior_grid() (cascade_at.dismod.api.dismod_extractor.DismodExtractor method)
gaussian (cascade_at.dismod.constants.DensityEnum attribute)
Gaussian (class in cascade_at.model.priors)
gbd_round_id (cascade_at.settings.settings_config.Policies attribute)
(cascade_at.settings.settings_config.SettingsConfig attribute)
get_all_rates_grids() (cascade_at.model.grid_alchemy.Alchemy method)
get_best_cod_correct() (in module cascade_at.inputs.csmr)
get_commands() (cascade_at.cascade.cascade_commands._CascadeCommand method)
get_interpolated_covariate_values() (in module cascade_at.inputs.utilities.covariate_weighting)
get_mulcov_priors() (in module cascade_at.executor.dismod_db)
get_mulcovs() (in module cascade_at.executor.mulcov_statistics)
get_mulstd() (cascade_at.model.var.Var method)
get_omega_df() (cascade_at.dismod.api.dismod_filler.DismodFiller method)
get_parent_child_model() (cascade_at.dismod.api.dismod_filler.DismodFiller method)
get_population() (cascade_at.inputs.population.Population method)
get_predictions() (cascade_at.dismod.api.dismod_extractor.DismodExtractor method)
get_prior() (in module cascade_at.executor.dismod_db)
get_prior_avgint_grid() (in module cascade_at.dismod.api.fill_extract_helpers.posterior_to_prior)
get_raw() (cascade_at.inputs.asdr.ASDR method)
(cascade_at.inputs.covariate_data.CovariateData method)
(cascade_at.inputs.csmr.CSMR method)
(cascade_at.inputs.data.CrosswalkVersion method)
get_raw_inputs() (cascade_at.inputs.measurement_inputs.MeasurementInputs method)
get_smoothing_grid() (cascade_at.model.grid_alchemy.Alchemy method)
group() (cascade_at.inputs.utilities.covariate_specifications.EpiVizCovariateMultiplier property)
I
incidence (cascade_at.dismod.constants.IntegrandEnum attribute)
IntArg (class in cascade_at.executor.args.args)
integrand
integrand_map (cascade_at.inputs.measurement_inputs.MeasurementInputs.self attribute)
integrand_measure_id (cascade_at.settings.settings_config.DataCV attribute)
(cascade_at.settings.settings_config.DataDensity attribute)
(cascade_at.settings.settings_config.DataEta attribute)
integrand_to_gbd_measures() (in module cascade_at.dismod.integrand_mappings)
INTEGRAND_TO_WEIGHT (cascade_at.dismod.constants attribute)
IntegrandEnum (class in cascade_at.dismod.constants)
interpolate() (cascade_at.inputs.utilities.covariate_weighting.CovariateInterpolator method)
interpolate_country_covariate_values() (cascade_at.inputs.measurement_inputs.MeasurementInputs method)
IntField (class in cascade_at.core.form.fields)
iota (cascade_at.dismod.constants.RateEnum attribute)
is_leaf() (cascade_at.inputs.locations.LocationDAG method)
K
key() (cascade_at.inputs.utilities.covariate_specifications.EpiVizCovariateMultiplier property)
kind_and_id() (in module cascade_at.inputs.utilities.covariate_specifications)
L
laplace (cascade_at.dismod.constants.DensityEnum attribute)
Laplace (class in cascade_at.model.priors)
leaf_fit() (in module cascade_at.cascade.cascade_stacks)
limited_memory_max_history_fixed (cascade_at.settings.settings_config.Policies attribute)
ListArg (class in cascade_at.executor.args.args)
ListField (class in cascade_at.core.form.fields)
load_settings() (in module cascade_at.settings.settings)
location (cascade_at.settings.settings_config.RandomEffectBound attribute)
(cascade_at.settings.settings_config.Smoothing attribute)
location_dag (cascade_at.inputs.measurement_inputs.MeasurementInputs.self attribute)
location_set_version_id (cascade_at.settings.settings_config.SettingsConfig attribute)
LocationDAG (class in cascade_at.inputs.locations)
log_gaussian (cascade_at.dismod.constants.DensityEnum attribute)
log_laplace (cascade_at.dismod.constants.DensityEnum attribute)
log_students (cascade_at.dismod.constants.DensityEnum attribute)
log_students_dof (cascade_at.settings.settings_config.SettingsConfig attribute)
LogGaussian (class in cascade_at.model.priors)
LogLaplace (class in cascade_at.model.priors)
LogLevel (class in cascade_at.executor.args.args)
LogStudentsT (class in cascade_at.model.priors)
M
make_cascade_dag() (in module cascade_at.cascade.cascade_dags)
map_to_integrands() (cascade_at.inputs.data.CrosswalkVersion static method)
max (cascade_at.settings.settings_config.SmoothingPrior attribute)
max_difference() (cascade_at.model.covariate.Covariate property)
max_num_iter (cascade_at.settings.settings_config.SettingsConfig attribute)
mean (cascade_at.settings.settings_config.SmoothingPrior attribute)
meas_noise_effect (cascade_at.settings.settings_config.Policies attribute)
measure_id (cascade_at.settings.settings_config.CountryCovariate attribute)
(cascade_at.settings.settings_config.StudyCovariate attribute)
measurement
MeasurementInputs (class in cascade_at.inputs.measurement_inputs)
MeasurementInputsFromSettings (class in cascade_at.inputs.measurement_inputs)
measures_to_exclude_from_settings() (in module cascade_at.settings.convert)
midpoint_approximation (cascade_at.settings.settings_config.Model attribute)
midpoint_list_from_settings() (in module cascade_at.settings.convert)
min (cascade_at.settings.settings_config.SmoothingPrior attribute)
min_cv (cascade_at.settings.settings_config.SettingsConfig attribute)
min_cv_by_rate (cascade_at.settings.settings_config.SettingsConfig attribute)
min_cv_from_settings() (in module cascade_at.settings.convert)
MinCV (class in cascade_at.settings.settings_config)
MinCVRate (class in cascade_at.settings.settings_config)
minimum_meas_cv (cascade_at.settings.settings_config.Model attribute)
mle() (cascade_at.model.priors.Constant method)
(cascade_at.model.priors.Gaussian method)
(cascade_at.model.priors.Laplace method)
(cascade_at.model.priors.LogGaussian method)
(cascade_at.model.priors.LogStudentsT method)
(cascade_at.model.priors.StudentsT method)
(cascade_at.model.priors.Uniform method)
model (cascade_at.settings.settings_config.SettingsConfig attribute)
Model (class in cascade_at.model.model)
(class in cascade_at.settings.settings_config)
model_version_id (cascade_at.settings.settings_config.Model attribute)
modelable_entity_id (cascade_at.settings.settings_config.Model attribute)
ModelVersionID (class in cascade_at.executor.args.args)
module
cascade_at.cascade.cascade_commands
cascade_at.cascade.cascade_dags
cascade_at.cascade.cascade_stacks
cascade_at.core.form.abstract_form
cascade_at.core.form.fields
cascade_at.dismod.api.run_dismod
cascade_at.executor.args.args
cascade_at.executor.upload
cascade_at.inputs.covariate_specs
cascade_at.inputs.utilities.covariate_specifications
cascade_at.saver.results_handler
cascade_at.settings.convert
cascade_at.settings.settings
cascade_at.settings.settings_config
ModuleProxy (class in cascade_at.core.db)
mtall (cascade_at.dismod.constants.IntegrandEnum attribute)
mtexcess (cascade_at.dismod.constants.IntegrandEnum attribute)
mtother (cascade_at.dismod.constants.IntegrandEnum attribute)
mtspecific (cascade_at.dismod.constants.IntegrandEnum attribute)
mtstandard (cascade_at.dismod.constants.IntegrandEnum attribute)
mtwith (cascade_at.dismod.constants.IntegrandEnum attribute)
mulcov_statistics() (in module cascade_at.executor.mulcov_statistics)
mulcov_type (cascade_at.settings.settings_config.CountryCovariate attribute)
(cascade_at.settings.settings_config.StudyCovariate attribute)
MulcovStatistics (class in cascade_at.cascade.cascade_operations)
mulstd (cascade_at.settings.settings_config.CountryCovariate attribute)
(cascade_at.settings.settings_config.Smoothing attribute)
(cascade_at.settings.settings_config.StudyCovariate attribute)
mulstd() (cascade_at.model.age_time_grid.AgeTimeGrid property)
N
name() (cascade_at.inputs.utilities.covariate_specifications.EpiVizCovariate property)
(cascade_at.model.covariate.Covariate property)
NativeListField (class in cascade_at.core.form.fields)
node_id_from_location_id() (cascade_at.dismod.api.dismod_filler.DismodFiller method)
NoValue (class in cascade_at.core.form.abstract_form)
NPool (class in cascade_at.executor.args.args)
NSim (class in cascade_at.executor.args.args)
nu (cascade_at.inputs.measurement_inputs.MeasurementInputs.self attribute)
(cascade_at.settings.settings_config.SmoothingPrior attribute)
nu_from_settings() (in module cascade_at.settings.convert)
number_of_fixed_effect_samples (cascade_at.settings.settings_config.Policies attribute)
O
ode_step_size (cascade_at.settings.settings_config.Model attribute)
omega (cascade_at.dismod.constants.RateEnum attribute)
OptionField (class in cascade_at.core.form.fields)
override_priors() (cascade_at.model.grid_alchemy.Alchemy static method)
P
parent_child_model (cascade_at.dismod.api.dismod_filler.DismodFiller.self attribute)
parent_children() (cascade_at.inputs.locations.LocationDAG method)
ParentLocationID (class in cascade_at.executor.args.args)
parse_commands() (in module cascade_at.executor.args.arg_utils)
parse_options() (in module cascade_at.executor.args.arg_utils)
pini (cascade_at.dismod.constants.RateEnum attribute)
policies (cascade_at.settings.settings_config.SettingsConfig attribute)
Policies (class in cascade_at.settings.settings_config)
population (cascade_at.inputs.measurement_inputs.MeasurementInputs.self attribute)
Population (class in cascade_at.inputs.population)
Predict (class in cascade_at.cascade.cascade_operations)
(class in cascade_at.executor.predict)
predict_sample() (in module cascade_at.executor.predict)
predict_sample_pool() (in module cascade_at.executor.predict)
predict_sample_sequence() (in module cascade_at.executor.predict)
prep_data_avgint() (in module cascade_at.dismod.api.fill_extract_helpers.data_tables)
prevalence (cascade_at.dismod.constants.IntegrandEnum attribute)
print_level (cascade_at.settings.settings_config.SettingsConfig attribute)
prior_type (cascade_at.settings.settings_config.SmoothingPrior attribute)
priors (cascade_at.settings.settings_config.Eta attribute)
(cascade_at.settings.settings_config.StudentsDOF attribute)
prune_mortality_data() (cascade_at.inputs.measurement_inputs.MeasurementInputs method)
Q
quasi_fixed (cascade_at.settings.settings_config.Model attribute)
R
random (cascade_at.settings.settings_config.DerivativeTest attribute)
(cascade_at.settings.settings_config.FixedRandomFloat attribute)
(cascade_at.settings.settings_config.FixedRandomInt attribute)
random_effect (cascade_at.settings.settings_config.SettingsConfig attribute)
random_seed (cascade_at.settings.settings_config.Model attribute)
RandomEffectBound (class in cascade_at.settings.settings_config)
rate
(cascade_at.settings.settings_config.SettingsConfig attribute)
(cascade_at.settings.settings_config.Smoothing attribute)
rate_case (cascade_at.settings.settings_config.Model attribute)
rate_measure_id (cascade_at.settings.settings_config.MinCVRate attribute)
RateEnum (class in cascade_at.dismod.constants)
re_bound_location (cascade_at.settings.settings_config.SettingsConfig attribute)
read_inputs() (cascade_at.context.model_context.Context method)
read_table() (cascade_at.dismod.api.dismod_sqlite.DismodSQLite method)
reference() (cascade_at.model.covariate.Covariate property)
relabel_incidence (cascade_at.settings.settings_config.Model attribute)
relrisk (cascade_at.dismod.constants.IntegrandEnum attribute)
remission (cascade_at.dismod.constants.IntegrandEnum attribute)
reset_index() (cascade_at.inputs.measurement_inputs.MeasurementInputs method)
ResultsError
ResultsHandler (class in cascade_at.saver.results_handler)
rho (cascade_at.dismod.constants.RateEnum attribute)
root_fit() (in module cascade_at.cascade.cascade_stacks)
run() (in module cascade_at.executor.run)
run_dismod() (in module cascade_at.dismod.api.run_dismod)
run_dismod_commands() (in module cascade_at.dismod.api.run_dismod)
S
Sample (class in cascade_at.cascade.cascade_operations)
sample() (in module cascade_at.executor.sample)
sample_simulate_pool() (in module cascade_at.executor.sample)
sample_simulate_sequence() (in module cascade_at.executor.sample)
save_draw_files() (cascade_at.saver.results_handler.ResultsHandler method)
save_predictions() (in module cascade_at.executor.dismod_db)
save_summary_files() (cascade_at.saver.results_handler.ResultsHandler method)
set_mulstd() (cascade_at.model.var.Var method)
settings_from_model_version_id() (in module cascade_at.settings.settings)
settings_json_from_model_version_id() (in module cascade_at.settings.settings)
SettingsConfig (class in cascade_at.settings.settings_config)
SexID (class in cascade_at.executor.args.args)
SimpleTypeField (class in cascade_at.core.form.abstract_form)
simulate() (in module cascade_at.executor.sample)
Sincidence (cascade_at.dismod.constants.IntegrandEnum attribute)
single_fit() (in module cascade_at.cascade.cascade_stacks)
single_fit_with_uncertainty() (in module cascade_at.cascade.cascade_stacks)
SmoothGrid (class in cascade_at.model.smooth_grid)
Smoothing (class in cascade_at.settings.settings_config)
SmoothingPrior (class in cascade_at.settings.settings_config)
SmoothingPriorGroup (class in cascade_at.settings.settings_config)
spec() (cascade_at.inputs.utilities.covariate_specifications.EpiVizCovariate property)
split_sex (cascade_at.settings.settings_config.Model attribute)
StaticArgError
std (cascade_at.settings.settings_config.SmoothingPrior attribute)
StrArg (class in cascade_at.executor.args.args)
StrField (class in cascade_at.core.form.fields)
StringListField (class in cascade_at.core.form.fields)
students (cascade_at.dismod.constants.DensityEnum attribute)
students_dof (cascade_at.settings.settings_config.SettingsConfig attribute)
StudentsDOF (class in cascade_at.settings.settings_config)
StudentsT (class in cascade_at.model.priors)
study_covariate (cascade_at.settings.settings_config.SettingsConfig attribute)
study_covariate_id (cascade_at.settings.settings_config.StudyCovariate attribute)
StudyCovariate (class in cascade_at.settings.settings_config)
summarize_results() (cascade_at.saver.results_handler.ResultsHandler method)
summary_cols (cascade_at.saver.results_handler.ResultsHandler.self attribute)
susceptible (cascade_at.dismod.constants.IntegrandEnum attribute)
(cascade_at.dismod.constants.WeightEnum attribute)
T
task_dict (cascade_at.cascade.cascade_commands._CascadeCommand.self attribute)
time_grid (cascade_at.settings.settings_config.CountryCovariate attribute)
(cascade_at.settings.settings_config.Smoothing attribute)
(cascade_at.settings.settings_config.StudyCovariate attribute)
time_lower (cascade_at.settings.settings_config.SmoothingPrior attribute)
time_upper (cascade_at.settings.settings_config.SmoothingPrior attribute)
Tincidence (cascade_at.dismod.constants.IntegrandEnum attribute)
title (cascade_at.settings.settings_config.Model attribute)
to_dataframe() (cascade_at.inputs.locations.LocationDAG method)
to_gbd_avgint() (cascade_at.inputs.measurement_inputs.MeasurementInputs method)
tolerance (cascade_at.settings.settings_config.SettingsConfig attribute)
total (cascade_at.dismod.constants.WeightEnum attribute)
TraditionalCascade (class in cascade_at.cascade.cascade_commands)
transform_country_covariates() (cascade_at.inputs.measurement_inputs.MeasurementInputs method)
transformation (cascade_at.settings.settings_config.CountryCovariate attribute)
(cascade_at.settings.settings_config.StudyCovariate attribute)
transformation_id (cascade_at.inputs.utilities.covariate_specifications.EpiVizCovariate attribute)
U
uniform (cascade_at.dismod.constants.DensityEnum attribute)
Uniform (class in cascade_at.model.priors)
untransformed_covariate_name (cascade_at.inputs.utilities.covariate_specifications.EpiVizCovariate attribute)
update_status() (cascade_at.context.model_context.Context method)
update_table_columns() (cascade_at.dismod.api.dismod_sqlite.DismodSQLite method)
Upload (class in cascade_at.cascade.cascade_operations)
upload_final() (in module cascade_at.executor.upload)
upload_fit() (in module cascade_at.executor.upload)
upload_prior() (in module cascade_at.executor.upload)
upload_summaries() (cascade_at.saver.results_handler.ResultsHandler static method)
use_weighted_age_group_midpoints (cascade_at.settings.settings_config.Policies attribute)
V
validate_and_normalize() (cascade_at.core.form.abstract_form.Field method)
(cascade_at.core.form.fields.Dummy method)
value (cascade_at.settings.settings_config.DataCV attribute)
(cascade_at.settings.settings_config.DataDensity attribute)
(cascade_at.settings.settings_config.DataEta attribute)
(cascade_at.settings.settings_config.MinCV attribute)
(cascade_at.settings.settings_config.MinCVRate attribute)
(cascade_at.settings.settings_config.RandomEffectBound attribute)
(cascade_at.settings.settings_config.SmoothingPriorGroup attribute)
Var (class in cascade_at.model.var)
variable_count() (cascade_at.model.age_time_grid.AgeTimeGrid method)
W
WeightEnum (class in cascade_at.dismod.constants)
with_condition (cascade_at.dismod.constants.WeightEnum attribute)
with_hiv (cascade_at.settings.settings_config.Policies attribute)
withC (cascade_at.dismod.constants.IntegrandEnum attribute)
write_inputs() (cascade_at.context.model_context.Context method)
write_table() (cascade_at.dismod.api.dismod_sqlite.DismodSQLite method)
Z
zero_sum_random (cascade_at.settings.settings_config.Model attribute)
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